Paket: sga (0.10.15-7) [debports]
Links für sga
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Externe Ressourcen:
- Homepage [github.com]
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de novo genome assembler that uses string graphs
The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.
SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.
Andere Pakete mit Bezug zu sga
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- dep: libbamtools2.5.2 (>= 2.5.2+dfsg)
- dynamic library for manipulating BAM (genome alignment) files
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- dep: libc6.1 (>= 2.34)
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auch ein virtuelles Paket, bereitgestellt durch libc6.1-udeb
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- dep: libgcc-s1 (>= 3.4)
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-
- dep: perl
- Larry Wall's Practical Extraction und Report Language
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-ruffus
- Python3 computation pipeline library widely used in bioinformatics
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.1.4)
- Kompressions-Bibliothek - Laufzeit
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- rec: abyss
- Paralleler De-novo-Sequenzassembler für »short reads«
sga herunterladen
Architektur | Paketgröße | Größe (installiert) | Dateien |
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alpha (inoffizielle Portierung) | 755,4 kB | 2.753,0 kB | [Liste der Dateien] |