Paket: sga (0.10.15-7) [debports]

[ Quellcode:  ]

de novo genome assembler that uses string graphs

The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

Andere Pakete mit Bezug zu sga

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6.1 (>= 2.34)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6.1-udeb

• dep: libgcc-s1 (>= 3.4)

  GCC Support-Bibliothek

• dep: libgomp1 (>= 6)

  Unterstützungsbibliothek für GCC OpenMP (GOMP)

• dep: libstdc++6 (>= 13.1)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• dep: perl

  Larry Wall's Practical Extraction und Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-ruffus

  Python3 computation pipeline library widely used in bioinformatics

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.1.4)

  Kompressions-Bibliothek - Laufzeit

• rec: abyss

  Paralleler De-novo-Sequenzassembler für »short reads«

sga herunterladen

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Architektur	Paketgröße	Größe (installiert)	Dateien
alpha (inoffizielle Portierung)	755,4 kB	2.753,0 kB	[Liste der Dateien]