Package: python3-cyvcf2 (0.31.1-2) [debports]

[ Source:  ]

VCF parser based on htslib (Python 3)

This modules allows fast parsing of VCF and BCF including region-queries with Python. This is essential for efficient analyses of nucleotide variation with Python on high-throughput sequencing data.

cyvcf2 is a cython wrapper around htslib. Attributes like variant.gt_ref_depths return a numpy array directly so they are immediately ready for downstream use.

This package installs the library for Python 3.

Other Packages Related to python3-cyvcf2

• dep: libc6.1 (>= 2.7)

  GNU Biblioteca C: Bibliotecas compartilhadas
  also a virtual package provided by libc6.1-udeb

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: python3

  linguagem orientada a objetos de alto nível e interativa (versão python3 padrão)

  dep: python3 (<< 3.13)

  dep: python3 (>= 3.12~)

• dep: python3-click

  Command-Line Interface Creation Kit - Python 3.x

• dep: python3-coloredlogs

  colored terminal output for Python 3's logging module

• dep: python3-numpy (>= 1:1.25.0)

  Fast array facility to the Python language (Python 3)

• dep: python3-numpy-abi9

  virtual package provided by python3-numpy

Download python3-cyvcf2

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	846.6 kB	5,669.0 kB	[list of files]