Package: prime-phylo (1.0.11-12) [debports]

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bayesian estimation of gene trees taking the species tree into account

PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.

The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.

Other Packages Related to prime-phylo

• dep: libblas3

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  or libblas.so.3

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• dep: libboost-mpi1.83.0 (>= 1.83.0)

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• dep: libboost-serialization1.83.0 (>= 1.83.0)

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• dep: libc6.1 (>= 2.38)

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• dep: libgcc-s1 (>= 3.4)

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• dep: liblapack3

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  or liblapack.so.3

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• dep: libopenmpi3t64 (>= 4.1.6)

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• dep: libstdc++6 (>= 14.2.0-1)

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• dep: libxml2 (>= 2.7.4)

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• dep: perl

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• sug: mafft

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• sug: mrbayes

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• sug: muscle

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• sug: njplot

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• sug: phyml

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• sug: probalign

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• sug: python3-biopython

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• sug: raxml

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• sug: treeviewx

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Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	753.9 kB	3,662.0 kB	[list of files]