Package: concavity (0.1+dfsg.1-5) [debports]

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predictor of protein ligand binding sites from structure and conservation

ConCavity predicts protein ligand binding sites by combining evolutionary sequence conservation and 3D structure.

ConCavity takes as input a PDB format protein structure and optionally files that characterize the evolutionary sequence conservation of the chains in the structure file.

The following result files are produced by default:

 * Residue ligand binding predictions for each chain (*.scores).
 * Residue ligand binding predictions in a PDB format file (residue
   scores placed in the temp. factor field, *_residue.pdb).
 * Pocket prediction locations in a DX format file (*.dx).
 * PyMOL script to visualize the predictions (*.pml).

Other Packages Related to concavity

• dep: libc6.1 (>= 2.29)

  GNU Biblioteca C: Bibliotecas compartilhadas
  also a virtual package provided by libc6.1-udeb

• dep: libgcc-s1 (>= 3.0)

  Biblioteca de suporte GCC

• dep: libstdc++6 (>= 5)

  Biblioteca C++ padrão da GNU v3

• sug: conservation-code

  protein sequence conservation scoring tool

• sug: pymol

  sistema de gráficos de moléculas

Download concavity

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	237.3 kB	1,051.0 kB	[list of files]