Package: pbalign (0.3.2-1)

[ Source: pbalign  ]

map Pacific Biosciences reads to reference DNA sequences

pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format.

This package is part of the SMRTAnalysis suite.

Other Packages Related to pbalign

• dep: blasr (>= 5.3+0)

  mapping single-molecule sequencing reads

• dep: python

  linguagem interativa de alto nível orientada a objetos (versão Python2)

• dep: python-pbalign (= 0.3.2-1)

  map Pacific Biosciences reads to reference DNA sequences (Python2)

• dep: python-pkg-resources

  pacote de descoberta e acesso a recursos utilizando o pkg_resources

• rec: hdf5-tools

  ferramentas de execução para o Hierarchical Data Format 5 (HDF5)

• rec: python-pbh5tools

  tools for manipulating Pacific Biosciences HDF5 files -- Python 2 library

• sug: bowtie2

  ultrafast memory-efficient short read aligner

• sug: gmap

  spliced and SNP-tolerant alignment for mRNA and short reads

• sug: pbalign-doc

  documentation for pbalign

Download pbalign

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	9.3 kB	44.0 kB	[list of files]