Package: pbalign (0.3.2-1)

[ Source: pbalign  ]

map Pacific Biosciences reads to reference DNA sequences

pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format.

This package is part of the SMRTAnalysis suite.

Other Packages Related to pbalign

• dep: blasr (>= 5.3+0)

  mapping single-molecule sequencing reads

• dep: python

  interactive high-level object-oriented language (Python2 version)

• dep: python-pbalign (= 0.3.2-1)

  map Pacific Biosciences reads to reference DNA sequences (Python2)

• dep: python-pkg-resources

  Package Discovery and Resource Access using pkg_resources

• rec: hdf5-tools

  Hierarchical Data Format 5 (HDF5) - Runtime tools

• rec: python-pbh5tools

  tools for manipulating Pacific Biosciences HDF5 files -- Python 2 library

• sug: bowtie2

  ultrafast memory-efficient short read aligner

• sug: gmap

  spliced and SNP-tolerant alignment for mRNA and short reads

• sug: pbalign-doc

  documentation for pbalign

Download pbalign

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	9.3 kB	44.0 kB	[list of files]