Pacote: hts-nim-tools (0.2.1-1)

[ Fonte: hts-nim-tools  ]

tools biological sequences: bam-filter, count-reads, vcf-check

This package provides several tools that (at least at the time of their creation) provide functionalities beyond the routine provided by samtools and other reverse dependencies of the htslib.

These new tools are

 • bam-filter : filter BAM/CRAM/SAM files with a simple expression language
 • count-reads: count BAM/CRAM reads in regions given in a BED file
 • vcf-check  : check regions of a VCF against a background for missing chunks

and yes, as the name suggests, these tools are all implemented in nim, using the nim-hts (upstream: hts-nim) wrapper for the htslib.

Outros pacotes relacionados a hts-nim-tools

• dep: libc6 (>= 2.29)

  GNU Biblioteca C: Bibliotecas compartilhadas
  também um pacote virtual fornecido por libc6-udeb

• dep: nim-hts-dev

  wrapper for hts C library

Download de hts-nim-tools

Baixe para todas as arquiteturas disponíveis

Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	198.0 kB	864.0 kB	[lista de arquivos]
arm64	164.6 kB	844.0 kB	[lista de arquivos]
armel	182.9 kB	832.0 kB	[lista de arquivos]
armhf	182.9 kB	604.0 kB	[lista de arquivos]
i386	186.0 kB	843.0 kB	[lista de arquivos]
mips64el	137.8 kB	951.0 kB	[lista de arquivos]
mipsel	141.6 kB	934.0 kB	[lista de arquivos]
ppc64el	158.6 kB	916.0 kB	[lista de arquivos]