Pacote: trf (4.09.1-6)

[ Fonte: trf  ]

locate and display tandem repeats in DNA sequences

A tandem repeat in DNA is two or more adjacent, approximate copies of a pattern of nucleotides. Tandem Repeats Finder is a program to locate and display tandem repeats in DNA sequences. In order to use the program, the user submits a sequence in FASTA format. There is no need to specify the pattern, the size of the pattern or any other parameter. The output consists of two files: a repeat table file and an alignment file. The repeat table, viewable in a web browser, contains information about each repeat, including its location, size, number of copies and nucleotide content. Clicking on the location indices for one of the table entries opens a second browser page that shows an alignment of the copies against a consensus pattern. The program is very fast, analyzing sequences on the order of .5Mb in just a few seconds. Submitted sequences may be of arbitrary length. Repeats with pattern size in the range from 1 to 2000 bases are detected.

Outros pacotes relacionados a trf

• dep: libc6 (>= 2.34)

  GNU Biblioteca C: Bibliotecas compartilhadas
  também um pacote virtual fornecido por libc6-udeb

Download de trf

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Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	56.9 kB	167.0 kB	[lista de arquivos]
arm64	52.9 kB	183.0 kB	[lista de arquivos]
armel	55.4 kB	182.0 kB	[lista de arquivos]
armhf	53.0 kB	182.0 kB	[lista de arquivos]
i386	55.7 kB	166.0 kB	[lista de arquivos]
mips64el	55.3 kB	187.0 kB	[lista de arquivos]
mipsel	54.7 kB	186.0 kB	[lista de arquivos]
ppc64el	58.0 kB	183.0 kB	[lista de arquivos]
s390x	53.8 kB	163.0 kB	[lista de arquivos]