Pacote: pizzly (0.37.3+ds-9)

[ Fonte: pizzly  ]

Identifies gene fusions in RNA sequencing data

For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.

Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.

Outros pacotes relacionados a pizzly

• dep: kallisto

  near-optimal RNA-Seq quantification

• dep: libc6 (>= 2.34)

  GNU Biblioteca C: Bibliotecas compartilhadas
  também um pacote virtual fornecido por libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  Biblioteca de suporte GCC

• dep: libstdc++6 (>= 12)

  Biblioteca C++ padrão da GNU v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4)

  biblioteca de compressão - runtime (tempo de execução)

• rec: python3-h5py

  general-purpose Python interface to hdf5

Download de pizzly

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Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	285.5 kB	864.0 kB	[lista de arquivos]
arm64	248.9 kB	864.0 kB	[lista de arquivos]
mips64el	246.3 kB	962.0 kB	[lista de arquivos]
ppc64el	285.1 kB	992.0 kB	[lista de arquivos]
s390x	249.8 kB	876.0 kB	[lista de arquivos]