Pacote: estscan (3.0.3-6)

[ Fonte: estscan  ]

ORF-independent detector of coding DNA sequences

ESTScan is a program that can detect coding regions in DNA sequences, even if they are of low quality. ESTScan will also detect and correct sequencing errors that lead to frameshifts. ESTScan is not a gene prediction program , nor is it an open reading frame detector. In fact, its strength lies in the fact that it does not require an open reading frame to detect a coding region. As a result, the program may miss a few translated amino acids at either the N or the C terminus, but will detect coding regions with high selectivity and sensitivity.

ESTScan takes advantages of the bias in hexanucleotide usage found in coding regions relative to non-coding regions. This bias is formalized as an inhomogeneous 3-periodic fifth-order Hidden Markov Model (HMM). Additionally, the HMM of ESTScan has been extended to allows insertions and deletions when these improve the coding region statistics.

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Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	52.5 kB	257.0 kB	[lista de arquivos]
arm64	50.9 kB	241.0 kB	[lista de arquivos]
armel	51.4 kB	237.0 kB	[lista de arquivos]
armhf	49.6 kB	221.0 kB	[lista de arquivos]
i386	52.7 kB	253.0 kB	[lista de arquivos]
mips64el	53.6 kB	256.0 kB	[lista de arquivos]
mipsel	51.9 kB	240.0 kB	[lista de arquivos]
ppc64el	54.8 kB	433.0 kB	[lista de arquivos]
s390x	51.9 kB	245.0 kB	[lista de arquivos]