Pakiet: augur (24.4.0-1)

[ Pakiet źródłowy: augur  ]

pipeline components for real-time virus analysis

The nextstrain project is an attempt to make flexible informatic pipelines and visualization tools to track ongoing pathogen evolution as sequence data emerges. The nextstrain project derives from nextflu, which was specific to influenza evolution.

nextstrain is comprised of three components:

  * fauna: database and IO scripts for sequence and serological data
  * augur: informatic pipelines to conduct inferences from raw data
  * auspice: web app to visualize resulting inferences

Inne pakiety związane z augur

• dep: fasttree

  phylogenetic trees from alignments of nucleotide or protein sequences

• dep: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• dep: python3

  Interaktywny, wysokopoziomowy i obiektowy język programowania (domyślna wersja Python 3)

• dep: python3-bcbio-gff

  Python3 library to read and write Generic Feature Format

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-boto3

  Python interface to Amazon's Web Services - Python 3.x

• dep: python3-cvxopt

  Python3 package for convex optimization

• dep: python3-dendropy

  DendroPy Phylogenetic Computing Library (Python 3)

• dep: python3-importlib-resources

  Read resources from Python packages

  lub python3-supported-min (>= 3.11)

  Pakiet niedostępny

• dep: python3-ipdb

  IPython-based pdb replacement (Python 3 version)

• dep: python3-isodate

  ISO 8601 date/time/duration parser and formatter (Python 3 module)

• dep: python3-jsonschema

  An(other) implementation of JSON Schema

• dep: python3-matplotlib

  System do rysowania wykresów oparty na Pythonie w stylu podobnym do Matlaba

• dep: python3-networkx

  tool to create, manipulate and study complex networks (Python3)

• dep: python3-numpy

  Szybkie zarządzanie tablicami w języku Python (Python 3)

• dep: python3-packaging

  core utilities for python3 packages

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-pyfastx

  fast random access to sequences from FASTA/Q file - python3 module

• dep: python3-schedule

  Job scheduling for humans (Python 3)

• dep: python3-scipy

  Narzędzia naukowe dla Pythona 3

• dep: python3-seaborn

  statistical visualization library for Python3

• dep: python3-treetime (>= 0.9.4)

  inference of time stamped phylogenies and ancestral reconstruction (Python 3)

• dep: python3-xopen (>= 1.7.0-1~)

  Python3 module to open compressed files transparently

• dep: python3-zstandard

  Python bindings for interfacing with Zstandard library

• dep: raxml

  Randomizowane maksymalne prawdopodobieństwo drzew filogenetycznych

• dep: seqmagick

  imagemagick-like frontend to Biopython SeqIO

• dep: vcftools

  Zbiór narzędzi do pracy z plikami VCF

• rec: iqtree

  efficient phylogenetic software by maximum likelihood

Pobieranie augur

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