Pakiet: topp (2.6.0+cleaned1-4) [debports]

[ Pakiet źródłowy:  ]

set of programs implementing The OpenMS Proteomic Pipeline

TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis of HPLC/MS data. It consists of a set of numerous small applications that can be chained together to create analysis pipelines tailored for a specific problem. The applications make use of the libopenms library. Some examples of these applications are :

  - TOPPView: A viewer for mass spectrometry data.
  - TOPPAS: An assistant for GUI-driven TOPP workflow design.
  - DTAExtractor: Extracts spectra of an MS run file to several
    files in DTA format.
  - FileConverter:  Converts between different MS file formats.
  - FileFilter: Extracts or manipulates portions of data from peak,
    feature or consensus feature files.
  - SpectraMerger: Merges spectra from an LC/MS map, either by
    precursor or by RT blocks.
  - BaselineFilter: Removes the baseline from profile spectra using a
    top-hat filter.
  - InternalCalibration: Applies an internal calibration.
  - PTModel: Trains a model for the prediction of proteotypic
    peptides from a training set.
  - RTPredict: Predicts retention times for peptides using a model
    trained by RTModel.
  - ExecutePipeline: Executes workflows created by TOPPAS.

Inne pakiety związane z topp

• dep: libc6 (>= 2.34)

  Biblioteka GNU C: biblioteki współdzielone
  również pakiet wirtualny udostępniany przez libc6-udeb

• dep: libgcc-s4 (>= 4.1.1)

  Biblioteka wspomagająca GCC

• dep: libgomp1 (>= 6)

  Biblioteka wspierająca GCC OpenMP (GOMP)

• dep: libopenms2.6.0 (= 2.6.0+cleaned1-4)

  library for LC/MS data management and analysis - runtime

• dep: libqt5core5a (>= 5.11.3)

  Qt 5 core module

• dep: libqt5gui5 (>= 5.11.3)

  Qt 5 GUI module

  lub libqt5gui5-gles (>= 5.11.3)

  Qt 5 GUI module — OpenGL ES variant

• dep: libqt5widgets5 (>= 5.11.3)

  Qt 5 widgets module

• dep: libstdc++6 (>= 13.1)

  Standardowa biblioteka GNU C++, wersja 3

• dep: libxerces-c3.2

  validating XML parser library for C++

• dep: openms-common (= 2.6.0+cleaned1-4)

  package for LC/MS data management and analysis - shared data

• sug: openms-doc

  package for LC/MS data management and analysis - documentation

Pobieranie topp

Pobierz dla wszystkich dostępnych architektur

Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
hppa (port nieoficjalny)	3 070,1 KiB	17 182,0 KiB	[lista plików]