Pakiet: sumatra (1.0.31-2)

[ Pakiet źródłowy: sumatra  ]

fast and exact comparison and clustering of sequences

With the development of next-generation sequencing, efficient tools are needed to handle millions of sequences in reasonable amounts of time. Sumatra is a program developed by the LECA. Sumatra aims to compare sequences in a way that is fast and exact at the same time. This tool has been developed to be adapted to the type of data generated by DNA metabarcoding, i.e. entirely sequenced, short markers. Sumatra computes the pairwise alignment scores from one dataset or between two datasets, with the possibility to specify a similarity threshold under which pairs of sequences that have a lower similarity are not reported. The output can then go through a classification process with programs such as MCL or MOTHUR.

Inne pakiety związane z sumatra

• dep: libc6 (>= 2.14) [amd64]

  Biblioteka GNU C: biblioteki współdzielone
  również pakiet wirtualny udostępniany przez libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.7) [armhf, i386]

Pobieranie sumatra

Pobierz dla wszystkich dostępnych architektur

Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	95,0 KiB	169,0 KiB	[lista plików]
arm64	96,2 KiB	169,0 KiB	[lista plików]
armhf	95,1 KiB	149,0 KiB	[lista plików]
i386	101,5 KiB	181,0 KiB	[lista plików]