Pakiet: libvcflib-tools (1.0.0~rc2+dfsg-2)

[ Pakiet źródłowy: libvcflib  ]

C++ library for parsing and manipulating VCF files (tools)

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

This package contains several tools using the library.

Inne pakiety związane z libvcflib-tools

• dep: libbz2-1.0

  Wysokiej jakości biblioteka kompresji plików - wersja uruchomieniowa

• dep: libc6 (>= 2.23)

  Biblioteka GNU C: biblioteki współdzielone
  również pakiet wirtualny udostępniany przez libc6-udeb

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libfastahack0 (>= 0.0+git20160702.bbc645f)

  library for indexing and sequence extraction from FASTA files (lib)

• dep: libgcc1 (>= 1:3.0)

  Biblioteka wspomagająca GCC

• dep: libhts2 (>= 1.0)

  C library for high-throughput sequencing data formats

• dep: liblzma5 (>= 5.1.1alpha+20110809)

  Biblioteka do kompresji w formacie XZ

• dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)

  determine similar regions between two strings or genomic sequences (lib)

• dep: libstdc++6 (>= 5.2)

  Standardowa biblioteka GNU C++, wersja 3

• dep: libtabixpp0

  C++ wrapper to tabix indexer

• dep: libvcflib1

  C++ library for parsing and manipulating VCF files

• dep: python

  Interaktywny, wysokopoziomowy język obiektowy (wersja Python2)

• dep: r-base-core

  GNU R core of statistical computation and graphics system

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-gridbase

  GNU R Integration of base and grid graphics

• dep: r-cran-plyr

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• dep: zlib1g (>= 1:1.1.4)

  Biblioteka kompresyjna - pliki wykonawcze

• sug: r-cran-pracma

  practical numerical math functions for GNU R

Pobieranie libvcflib-tools

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Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	614,6 KiB	4 185,0 KiB	[lista plików]