Pakiet: python3-seqcluster (1.2.7+ds-1) [contrib]

[ Pakiet źródłowy: python-seqcluster  ]

analysis of small RNA in NGS data

Identifies small RNA sequences of all sorts in RNA sequencing data. This is especially helpful for the identification of RNA that is neither coding nor belonging to the already well-established group of miRNA, towards many tools feel constrained to.

This package provides the Python module. For executables see the package 'seqcluster'.

Inne pakiety związane z python3-seqcluster

• dep: python3

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• dep: python3-colorlog

  formatter to use with the logging module of Python 3

• dep: python3-mirtop

  annotate miRNAs with a standard mirna/isomir naming (Python 3)

• dep: python3-nose (>= 1.3.0)

  test discovery and running for Python3 unittest

• dep: python3-numpy

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• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-progressbar (>= 2.3.0)

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• dep: python3-pybedtools

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• dep: python3-pysam

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• dep: python3-recommonmark

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• dep: python3-scipy (>= 0.15.1)

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• dep: python3-yaml

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• rec: bedtools

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• rec: bowtie2

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  lub bowtie

  Ultrafast memory-efficient short read aligner

• rec: fastqc

  quality control for high throughput sequence data

• rec: libjs-bootstrap

  HTML, CSS and JS framework

• rec: libjs-jquery

  JavaScript library for dynamic web applications

• rec: libjs-jquery-datatables

  jQuery plug-in that makes nice tables from different data sources

• rec: libjs-jquery-tablesorter

  jQuery flexible client-side table sorting plugin

• rec: libjs-jquery-ui

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• rec: mirtop

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• rec: python3-cutadapt

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• rec: python3-dateutils

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• rec: r-bioc-degreport

  BioConductor report of DEG analysis

• rec: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

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• rec: r-bioc-htsfilter

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• rec: r-cran-ggplot2

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• rec: r-cran-gplots

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• rec: r-cran-gridextra

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• rec: r-cran-gtools

  GNU R package with R programming tools by Greg Warnes et al

• rec: r-cran-knitr

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• rec: r-cran-pheatmap

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• rec: r-cran-reshape

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• rec: rna-star

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• rec: vienna-rna

  RNA sequence analysis

• sug: seqcluster

  analysis of small RNA in NGS data

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