Pakket: r-bioc-grohmm (1.38.0-1)

[ Bron: r-bioc-grohmm  ]

GRO-seq Analysis Pipeline

This BioConductor package provides a pipeline for the analysis of GRO- seq data. Among the more advanced features, r-bioc-grohmm predicts the boundaries of transcriptional activity across the genome de novo using a two-state hidden Markov model (HMM).

The used model essentially divides the genome into transcribed and non- transcribed regions in a strand specific manner. HMMs are used to identify the leading edge of Pol II at genes activated by a stimulus in GRO-seq time course data. This approach allows the genome-wide interrogation of transcription rates in cells.

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  dep: libc6 (>= 2.4) [amd64, mips64el, s390x]

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r-bioc-grohmm downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	4.344,9 kB	4.515,0 kB	[overzicht]
arm64	4.342,8 kB	4.523,0 kB	[overzicht]
mips64el	4.342,9 kB	4.526,0 kB	[overzicht]
ppc64el	4.348,2 kB	4.523,0 kB	[overzicht]
riscv64	4.344,5 kB	4.499,0 kB	[overzicht]
s390x	4.346,0 kB	4.515,0 kB	[overzicht]