Pakket: python3-freecontact (1.1-8)

[ Bron: python-freecontact  ]

fast protein contact predictor - binding for Python3

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the Python3 binding.

Andere aan python3-freecontact gerelateerde pakketten

• dep: libboost-python1.83.0 (>= 1.83.0)

  Boost.Python Library

• dep: libboost-python1.83.0-py312

  virtueel pakket geboden door libboost-python1.83.0

• dep: libc6 (>= 2.32)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libfreecontact0t64 (>= 1.0.21)

  fast protein contact predictor library

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: python3 (<< 3.13)

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (>= 3.12~)

python3-freecontact downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	74,8 kB	266,0 kB	[overzicht]
arm64	72,2 kB	274,0 kB	[overzicht]
armel	70,7 kB	253,0 kB	[overzicht]
armhf	71,4 kB	233,0 kB	[overzicht]
i386	76,6 kB	265,0 kB	[overzicht]
mips64el	71,5 kB	280,0 kB	[overzicht]
ppc64el	75,2 kB	338,0 kB	[overzicht]
riscv64	74,0 kB	246,0 kB	[overzicht]
s390x	73,8 kB	262,0 kB	[overzicht]