[ Bron: tiddit ]
Pakket: tiddit (3.6.1+dfsg-1 en anderen)
Verwijzigingen voor tiddit
Debian bronnen:
Het bronpakket tiddit downloaden:
Beheerders:
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
structural variant calling
TIDDIT is a tool to used to identify chromosomal rearrangements using Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter- chromosomal translocations, deletions, tandem-duplications and inversions, using supplementary alignments as well as discordant pairs.
TIDDIT has two analysis modules. The sv mode, which is used to search for structural variants. And the cov mode that analyse the read depth of a bam file and generates a coverage report.
Andere aan tiddit gerelateerde pakketten
|
|
|
|
-
- dep: libc6 (>= 2.4)
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.13)
- dep: python3 (>= 3.12~)
-
- dep: python3-joblib
- tools to provide lightweight pipelining in Python
-
- dep: python3-numpy
- Fast array facility to the Python language (Python 3)
-
- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)