Pakket: fastqtl (2.184+v7+dfsg-4 en anderen)

[ Bron: fastqtl  ]

Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes

The goal of FastQTL is to identify single-nucleotide polymorphisms (SNPs) which are significantly associated with various molecular phenotypes (i.e. expression of known genes, cytosine methylation levels, etc). It performs scans for all possible phenotype-variant pairs in cis (i.e. variants located within a specific window around a phenotype). FastQTL implements a new permutation scheme (Beta approximation) to accurately and rapidly correct for multiple-testing at both the genotype and phenotype levels.

Tags: Field: Biology, Bioinformatics, User Interface: interface::commandline, role::program, Purpose: Analysing

Andere aan fastqtl gerelateerde pakketten

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  of libblas.so.3

  virtueel pakket geboden door libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libboost-iostreams1.83.0 (>= 1.83.0)

  Boost.Iostreams Library

• dep: libboost-program-options1.83.0 (>= 1.83.0)

  program options library for C++

• dep: libc6 (>= 2.38)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, riscv64]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgsl28 (>= 2.8+dfsg)

  GNU Scientific Library (GSL) -- library package

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 14)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: r-mathlib (>= 4.4.1)

  GNU R standalone mathematics library

• rec: r-cran-argparser

  GNU R command-line argument parser

• rec: r-cran-qvalue

  Pakket niet beschikbaar

• rec: r-cran-tools

  Pakket niet beschikbaar

• sug: fastqtl-doc

  QTL mapper in cis for molecular phenotypes - documentation

fastqtl downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	2.184+v7+dfsg-4+b3	237,4 kB	790,0 kB	[overzicht]
arm64	2.184+v7+dfsg-4+b3	202,7 kB	726,0 kB	[overzicht]
armel	2.184+v7+dfsg-4+b3	187,2 kB	661,0 kB	[overzicht]
armhf	2.184+v7+dfsg-4+b3	189,4 kB	497,0 kB	[overzicht]
i386	2.184+v7+dfsg-4+b3	234,8 kB	769,0 kB	[overzicht]
mips64el	2.184+v7+dfsg-4+b3	195,1 kB	821,0 kB	[overzicht]
ppc64el	2.184+v7+dfsg-4+b3	243,8 kB	918,0 kB	[overzicht]
riscv64	2.184+v7+dfsg-4+b3	208,9 kB	566,0 kB	[overzicht]
s390x	2.184+v7+dfsg-4+b3	219,1 kB	758,0 kB	[overzicht]