Pakket: python3-cyvcf2 (0.31.1-2) [debports]

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VCF parser based on htslib (Python 3)

This modules allows fast parsing of VCF and BCF including region-queries with Python. This is essential for efficient analyses of nucleotide variation with Python on high-throughput sequencing data.

cyvcf2 is a cython wrapper around htslib. Attributes like variant.gt_ref_depths return a numpy array directly so they are immediately ready for downstream use.

This package installs the library for Python 3.

Andere aan python3-cyvcf2 gerelateerde pakketten

• dep: libc6 (>= 2.7)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.13)

  dep: python3 (>= 3.12~)

• dep: python3-click

  Command-Line Interface Creation Kit - Python 3.x

• dep: python3-coloredlogs

  colored terminal output for Python 3's logging module

• dep: python3-numpy (>= 1:1.25.0)

  Fast array facility to the Python language (Python 3)

• dep: python3-numpy-abi9

  virtueel pakket geboden door python3-numpy

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Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
ppc64 (unofficial port)	864,3 kB	5.728,0 kB	[overzicht]