Pakket: r-bioc-structuralvariantannotation (1.22.0+ds-1)

[ Bron: r-bioc-structuralvariantannotation  ]

Experimenteel pakket

Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.

Variant annotations for structural variants

StructuralVariantAnnotation contains useful helper functions for dealing with structural variants in VCF format. The packages contains functions for parsing VCFs from a number of popular callers as well as functions for dealing with breakpoints involving two separate genomic loci encoded as GRanges objects.

Andere aan r-bioc-structuralvariantannotation gerelateerde pakketten

• dep: r-api-4.0

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• dep: r-api-bioc-3.20

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biostrings

  GNU R string objects representing biological sequences

• dep: r-bioc-genomeinfodb

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• dep: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-pwalign

  Perform pairwise sequence alignments

• dep: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-bioc-variantannotation

  BioConductor annotation of genetic variants

• dep: r-cran-assertthat

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• dep: r-cran-dplyr

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• dep: r-cran-rlang

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• dep: r-cran-stringr

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• sug: r-bioc-biovizbase

  GNU R basic graphic utilities for visualization of genomic data

• sug: r-bioc-ggbio

  Visualization tools for genomic data

• sug: r-cran-devtools

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• sug: r-cran-knitr

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• sug: r-cran-rmarkdown

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• sug: r-cran-roxygen2

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• sug: r-cran-testthat (>= 2.1.0)

  GNU R testsuite

• sug: r-cran-tidyverse

  Easily Install and Load the 'Tidyverse'

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Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
all	391,6 kB	1.297,0 kB	[overzicht]