Pakket: r-bioc-genomicfeatures (1.58.0+dfsg-1)

[ Bron: r-bioc-genomicfeatures  ]

Experimenteel pakket

Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.

GNU R tools for making and manipulating transcript centric annotations

A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format.

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• dep: r-bioc-biostrings

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• dep: r-bioc-rtracklayer

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• sug: r-bioc-annotationfilter

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• sug: r-bioc-bsgenome

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• sug: r-bioc-ensembldb

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• sug: r-bioc-genomicalignments (>= 1.15.7)

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• sug: r-bioc-rsamtools

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Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
all	908,0 kB	1.485,0 kB	[overzicht]