Pakket: r-bioc-megadepth (1.16.0+ds-1)

[ Bron: r-bioc-megadepth  ]

Experimenteel pakket

Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.

BioCOnductor BigWig and BAM related utilities

This package provides an R interface to Megadepth by Christopher Wilks available at https://github.com/ChristopherWilks/megadepth. It is particularly useful for computing the coverage of a set of genomic regions across bigWig or BAM files. With this package, you can build base-pair coverage matrices for regions or annotations of your choice from BigWig files. Megadepth was used to create the raw files provided by https://bioconductor.org/packages/recount3.

Andere aan r-bioc-megadepth gerelateerde pakketten

• dep: megadepth

  computes coverage from BigWig and BAM sequencing files

• dep: r-api-4.0

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• dep: r-api-bioc-3.20

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• dep: r-cran-cmdfun

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• dep: r-cran-readr

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• dep: r-cran-xfun

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• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-genomeinfodb

  BioConductor utilities for manipulating chromosome identifiers

• sug: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• sug: r-cran-covr

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• sug: r-cran-knitr

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• sug: r-cran-rmarkdown

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• sug: r-cran-sessioninfo

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• sug: r-cran-testthat

  GNU R testsuite

r-bioc-megadepth downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
all	84,3 kB	166,0 kB	[overzicht]