Pakket: khmer (2.1.2+dfsg-6)

[ Bron: khmer  ]

in-memory DNA sequence kmer counting, filtering & graph traversal

khmer is a library and suite of command line tools for working with DNA sequence. It is primarily aimed at short-read sequencing data such as that produced by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis, hence the name.

Tags: Biology: Fasta/Pearson, Nucleic Acids, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c++, implemented-in::python, User Interface: Command Line, Role: role::program, use::analysing, Purpose: Comparing, Filtering

Andere aan khmer gerelateerde pakketten

• dep: cython3 (>= 0.26.1)

  C-Extensions for Python 3

• dep: khmer-common

  common files for the khmer project tools

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.17)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc1 (>= 1:3.0)

  GCC support bibliotheek

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.8)

  dep: python3 (>= 3.7~)

• dep: python3-bz2file

  Python3 library for reading and writing bzip2-compressed files

• dep: python3-screed (>= 1.0)

  short nucleotide read sequence utils in Python 3

• dep: zlib1g (>= 1:1.2.3.4)

  compressiebibliotheek - programma's

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Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
arm64	6.408,0 kB	29.286,0 kB	[overzicht]