Pakket: r-bioc-dada2 (1.18.0+dfsg-1)

[ Bron: r-bioc-dada2  ]

sample inference from amplicon sequencing data

The dada2 package contributes to software workflows to interpret sequencing data from microbiota - the relative abundance of bacterial and/or yeast, typically measured in the gut. It infers exact amplicon sequence variants (ASVs) from high-throughput amplicon sequencing data, replacing the coarser and less accurate OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier, and species-level assignment to 16S rRNA gene fragments by exact matching.

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• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
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• dep: libgcc-s1 (>= 3.0)

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• dep: libstdc++6 (>= 5.2)

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• dep: libtbb2 (>= 2017~U7)

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• dep: r-api-4.0

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• dep: r-bioc-biocgenerics (>= 0.22.0)

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• dep: r-bioc-biostrings (>= 2.42.1)

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• dep: r-bioc-iranges (>= 2.6.0)

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• dep: r-bioc-shortread (>= 1.32.0)

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• dep: r-bioc-xvector (>= 0.16.0)

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r-bioc-dada2 downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	1.838,1 kB	2.182,0 kB	[overzicht]