alle opties
bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Bron: r-bioc-dada2  ]

Pakket: r-bioc-dada2 (1.18.0+dfsg-1)

Verwijzigingen voor r-bioc-dada2

Screenshot

Debian bronnen:

Het bronpakket r-bioc-dada2 downloaden:

Beheerders:

Externe bronnen:

Vergelijkbare pakketten:

sample inference from amplicon sequencing data

The dada2 package contributes to software workflows to interpret sequencing data from microbiota - the relative abundance of bacterial and/or yeast, typically measured in the gut. It infers exact amplicon sequence variants (ASVs) from high-throughput amplicon sequencing data, replacing the coarser and less accurate OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier, and species-level assignment to 16S rRNA gene fragments by exact matching.

Andere aan r-bioc-dada2 gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • enhances

r-bioc-dada2 downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 1.838,1 kB2.182,0 kB [overzicht]