Pakket: last-align (1179-1 en anderen)

[ Bron: last-align  ]

genome-scale comparison of biological sequences

LAST is software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. Here are two things LAST is good at:

 * Comparing large (e.g. mammalian) genomes.
 * Mapping lots of sequence tags onto a genome.

The main technical innovation is that LAST finds initial matches based on their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers). This allows one to map tags to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. To find these variable-sized matches, it uses a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a discontiguous suffix array, analogous to spaced seeds.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c++, Role: Program

Andere aan last-align gerelateerde pakketten

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, i386, mipsel]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libstdc++6 (>= 6)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.1.4)

  compressiebibliotheek - programma's

• rec: parallel

  build and execute command lines from standard input in parallel

• rec: python3

  interactive high-level object-oriented language (default python3 version)

• rec: python3-pil

  Python Imaging Library (Python3)

last-align downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	1179-1+b1	1.826,5 kB	21.262,0 kB	[overzicht]
arm64	1179-1+b1	751,8 kB	3.742,0 kB	[overzicht]
armel	1179-1+b1	682,4 kB	3.778,0 kB	[overzicht]
armhf	1179-1+b1	679,5 kB	2.910,0 kB	[overzicht]
i386	1179-1+b1	3.016,0 kB	29.262,0 kB	[overzicht]
mips64el	1179-1+b1	798,0 kB	4.606,0 kB	[overzicht]
mipsel	1179-1+b1	732,3 kB	4.556,0 kB	[overzicht]
ppc64el	1179-1+b1	843,7 kB	4.850,0 kB	[overzicht]
s390x	1179-1+b1	775,4 kB	4.234,0 kB	[overzicht]