Pakket: spaln (2.4.13f+dfsg-1)

[ Bron: spaln  ]

splicing-aware transcript-alignment to genomic DNA

Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. It also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.

spaln supports a combination of protein sequence database and a given genomic segment and performs rapid similarity searches and (semi-)global alignments of a set of protein sequence queries against a protein sequence database. Spaln adopts multi-phase heuristics that makes it possible to perform the job on a conventional personal computer.

Andere aan spaln gerelateerde pakketten

• dep: libc6 (>= 2.34)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.3.1)

  GCC support bibliotheek

• dep: libstdc++6 (>= 5)

  GNU Standard C++ Library v3

• dep: spaln-data

  splicing-aware transcript-alignment to genomic DNA (data)

• dep: zlib1g (>= 1:1.2.0.2)

  compressiebibliotheek - programma's

spaln downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	338,7 kB	821,0 kB	[overzicht]
arm64	304,6 kB	835,0 kB	[overzicht]
mips64el	323,1 kB	1.047,0 kB	[overzicht]
ppc64el	353,4 kB	1.092,0 kB	[overzicht]
s390x	341,4 kB	954,0 kB	[overzicht]