Pakket: python3-cyvcf2 (0.30.18-1 en anderen)

[ Bron: cyvcf2  ]

VCF parser based on htslib (Python 3)

This modules allows fast parsing of VCF and BCF including region-queries with Python. This is essential for efficient analyses of nucleotide variation with Python on high-throughput sequencing data.

cyvcf2 is a cython wrapper around htslib. Attributes like variant.gt_ref_depths return a numpy array directly so they are immediately ready for downstream use.

This package installs the library for Python 3.

Andere aan python3-cyvcf2 gerelateerde pakketten

• dep: libc6 (>= 2.7)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.12)

  dep: python3 (>= 3.11~)

• dep: python3-click

  Wrapper around optparse for command line utilities - Python 3.x

• dep: python3-coloredlogs

  colored terminal output for Python 3's logging module

• dep: python3-numpy (>= 1:1.22.0)

  Fast array facility to the Python 3 language

• dep: python3-numpy-abi9

  virtueel pakket geboden door python3-numpy

python3-cyvcf2 downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
armhf	0.30.18-1+b2	754,1 kB	4.452,0 kB	[overzicht]