Package: python3-cyvcf2 (0.30.18-1 and others)

[ Source: cyvcf2  ]

VCF parser based on htslib (Python 3)

This modules allows fast parsing of VCF and BCF including region-queries with Python. This is essential for efficient analyses of nucleotide variation with Python on high-throughput sequencing data.

cyvcf2 is a cython wrapper around htslib. Attributes like variant.gt_ref_depths return a numpy array directly so they are immediately ready for downstream use.

This package installs the library for Python 3.

Other Packages Related to python3-cyvcf2

• dep: libc6 (>= 2.7)

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• dep: libhts3 (>= 1.10)

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• dep: python3

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  dep: python3 (<< 3.12)

  dep: python3 (>= 3.11~)

• dep: python3-click

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• dep: python3-coloredlogs

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• dep: python3-numpy (>= 1:1.22.0)

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• dep: python3-numpy-abi9

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Architecture	Version	Package Size	Installed Size	Files
armhf	0.30.18-1+b2	754.1 kB	4,452.0 kB	[list of files]