Package: r-bioc-densvis (1.16.0+dfsg-2 and others)
Links for r-bioc-densvis
Debian Resources:
Download Source Package r-bioc-densvis:
- [r-bioc-densvis_1.16.0+dfsg-2.dsc]
- [r-bioc-densvis_1.16.0+dfsg.orig.tar.xz]
- [r-bioc-densvis_1.16.0+dfsg-2.debian.tar.xz]
Maintainers:
External Resources:
- Homepage [bioconductor.org]
Similar packages:
density-preserving data visualization via non-linear dimensionality reduction
Implements the density-preserving modification to t-SNE and UMAP described by Narayan et al. (2020) <doi:10.1101/2020.05.12.077776>. The non-linear dimensionality reduction techniques t-SNE and UMAP enable users to summarise complex high-dimensional sequencing data such as single cell RNAseq using lower dimensional representations. These lower dimensional representations enable the visualisation of discrete transcriptional states, as well as continuous trajectory (for example, in early development). However, these methods focus on the local neighbourhood structure of the data. In some cases, this results in misleading visualisations, where the density of cells in the low-dimensional embedding does not represent the transcriptional heterogeneity of data in the original high-dimensional space. den-SNE and densMAP aim to enable more accurate visual interpretation of high-dimensional datasets by producing lower-dimensional embeddings that accurately represent the heterogeneity of the original high-dimensional space, enabling the identification of homogeneous and heterogeneous cell states. This accuracy is accomplished by including in the optimisation process a term which considers the local density of points in the original high-dimensional space. This can help to create visualisations that are more representative of heterogeneity in the original high-dimensional space.
Other Packages Related to r-bioc-densvis
|
|
|
|
-
- dep: libblas3 [loong64, sparc64]
- 기본 선형 대수 참조 구현, 공유 라이브러리
- or libblas.so.3
- virtual package provided by libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
-
- dep: libc6 (>= 2.29) [not alpha, ia64, loong64, sh4]
- GNU C 라이브러리: 공유 라이브러리
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.36) [loong64]
- dep: libc6 (>= 2.37) [sh4]
-
- dep: libc6.1 (>= 2.29) [alpha]
- GNU C 라이브러리: 공유 라이브러리
also a virtual package provided by libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
-
- dep: libgcc-s1 (>= 3.0) [amd64, arm64, loong64, ppc64, x32]
- GCC 기능 지원 라이브러리
- dep: libgcc-s1 (>= 3.4) [alpha, sh4, sparc64]
- dep: libgcc-s1 (>= 4.2) [ia64]
-
- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC 기능 지원 라이브러리
-
- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC 기능 지원 라이브러리
-
- dep: libgfortran5 (>= 8) [loong64, sparc64]
- GNU 포트란 어플리케이션 런타임 라이브러리
-
- dep: libgomp1 (>= 4.2.1) [amd64, arm64, loong64]
- GCC OpenMP (GOMP) 지원 라이브러리
- dep: libgomp1 (>= 6) [not amd64, arm64, loong64]
-
- dep: liblapack3 [loong64, sparc64]
- 선형 대수 루틴 3 라이브러리 - 공유 버젼
- or liblapack.so.3
- virtual package provided by libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
-
- dep: libstdc++6 (>= 13.1) [not amd64, arm64, loong64]
- GNU 표준 C++ 라이브러리 v3
- dep: libstdc++6 (>= 14) [amd64, arm64]
- dep: libstdc++6 (>= 5.2) [loong64]
-
- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
-
- dep: r-api-4.0
- virtual package provided by r-base-core
-
- dep: r-api-bioc-3.17 [not amd64, arm64]
- Package not available
-
- dep: r-api-bioc-3.20 [amd64, arm64]
- virtual package provided by r-bioc-biocgenerics
-
- dep: r-bioc-basilisk
- freezing Python dependencies inside Bioconductor packages
-
- dep: r-cran-assertthat
- GNU R easy pre and post assertions
-
- dep: r-cran-irlba
- GNU R fast truncated SVD, PCA and symmetric eigendecomposition
-
- dep: r-cran-rcpp
- GNU R package for Seamless R and C++ Integration
-
- dep: r-cran-reticulate
- R interface to Python modules, classes, and functions
-
- dep: r-cran-rtsne [amd64, arm64]
- GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut
-
- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
-
- sug: r-cran-ggplot2
- implementation of the Grammar of Graphics
-
- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
-
- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
-
- sug: r-cran-rtsne [not amd64, arm64]
- GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut
-
- sug: r-cran-testthat [not loong64]
- GNU R testsuite
-
- sug: r-cran-uwot [not loong64]
- GNU R uniform manifold approximation and projection (UMAP)
Download r-bioc-densvis
Architecture | Version | Package Size | Installed Size | Files |
---|---|---|---|---|
alpha (unofficial port) | 1.10.3+dfsg-1 | 79.3 kB | 214.0 kB | [list of files] |
amd64 | 1.16.0+dfsg-2 | 82.6 kB | 204.0 kB | [list of files] |
arm64 | 1.16.0+dfsg-2 | 77.0 kB | 216.0 kB | [list of files] |
hppa (unofficial port) | 1.10.3+dfsg-1 | 81.8 kB | 212.0 kB | [list of files] |
ia64 (unofficial port) | 1.10.3+dfsg-1 | 92.0 kB | 305.0 kB | [list of files] |
loong64 (unofficial port) | 1.10.3+dfsg-1 | 76.7 kB | 198.0 kB | [list of files] |
m68k (unofficial port) | 1.10.3+dfsg-1 | 77.7 kB | 189.0 kB | [list of files] |
ppc64 (unofficial port) | 1.10.3+dfsg-1 | 86.1 kB | 281.0 kB | [list of files] |
sh4 (unofficial port) | 1.10.3+dfsg-1 | 87.3 kB | 213.0 kB | [list of files] |
sparc64 (unofficial port) | 1.10.3+dfsg-1 | 74.3 kB | 1,115.0 kB | [list of files] |
x32 (unofficial port) | 1.10.3+dfsg-1 | 80.8 kB | 193.0 kB | [list of files] |