Package: repeatmasker-recon (1.08-8) [debports]

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finds repeat families from biological sequences

The RECON package implements a de novo algorithm for the identification of repeat families from biological sequences.

The program implements an approach for the de novo identification and classification of repeat sequence families that is based on extensions to the usual approach of single linkage clustering of local pairwise alignments between genomic sequences. The extensions use multiple alignment information to define the boundaries of individual copies of the repeats and to distinguish homologous but distinct repeat element families. When tested on the human genome, this approach was able to properly identify and group known transposable elements. The program, should be useful for first-pass automatic classification of repeats in newly sequenced genomes.

Other Packages Related to repeatmasker-recon

• dep: libc6 (>= 2.34)

  GNU C 라이브러리: 공유 라이브러리
  also a virtual package provided by libc6-udeb

• dep: perl

  래리 월의 Practical Extraction and Report Language

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Architecture	Package Size	Installed Size	Files
ppc64 (unofficial port)	85.4 kB	656.0 kB	[list of files]