Package: sga (0.10.15-4)

[ Source: sga  ]

de novo genome assembler that uses string graphs

The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

Other Packages Related to sga

• dep: libbamtools2.5.1

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.23)

  GNU C 라이브러리: 공유 라이브러리
  also a virtual package provided by libc6-udeb

• dep: libgcc1 (>= 1:3.0)

  GCC 기능 지원 라이브러리

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) 지원 라이브러리

• dep: libstdc++6 (>= 5.2)

  GNU 표준 C++ 라이브러리 v3

• dep: python

  대화형 고급 객체 지향 언어 (파이선2 버젼)

• dep: python-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 2)

• dep: python-ruffus

  Python computation pipeline library widely used in bioinformatics

• dep: samtools

  SAM, BAM, CRAM 형식에서 시퀀스 정렬 처리

• dep: zlib1g (>= 1:1.1.4)

  압축 라이브러리 - 런타임

• rec: abyss (>= 2.0.2-1)

  짧은 읽기를 위한 de novo, 병렬, 시퀀스 어셈블러

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Architecture	Package Size	Installed Size	Files
amd64	954.4 kB	2,875.0 kB	[list of files]
arm64	670.7 kB	2,011.0 kB	[list of files]