Package: yanagiba (1.0.0-2)

Links for yanagiba

Debian Resources:

Download Source Package yanagiba:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Nilesh Patra (QA Page)
Pranav Ballaney (QA Page)

External Resources:

Homepage [github.com]

Similar packages:

filter low quality Oxford Nanopore reads basecalled with Albacore

Yanagiba is used to filter short or low quality Oxford Nanopore reads which have been basecalled with Albacore. It takes fastq.gz and an Albacore summary file as input. If no Albacore summary file is provided attempt to calculate mean qscore from directly from fastq file using NanoMath. Note: Calculated quality scores appear to be lower for reads called with Metrichor, you may need to lower your minqual setting in this case.

Other Packages Related to yanagiba

depends

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dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-biopython

Python3 library for bioinformatics
dep: python3-nanomath

simple math function for other Oxford Nanopore processing scripts
dep: python3-pandas

data structures for "relational" or "labeled" data

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Architecture	Package Size	Installed Size	Files
all	5.9 kB	32.0 kB	[list of files]