[ 源代码： yanagiba ]
软件包：yanagiba（1.0.0-2）
filter low quality Oxford Nanopore reads basecalled with Albacore
Yanagiba is used to filter short or low quality Oxford Nanopore reads which have been basecalled with Albacore. It takes fastq.gz and an Albacore summary file as input. If no Albacore summary file is provided attempt to calculate mean qscore from directly from fastq file using NanoMath. Note: Calculated quality scores appear to be lower for reads called with Metrichor, you may need to lower your minqual setting in this case.
其他与 yanagiba 有关的软件包
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- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-nanomath
- simple math function for other Oxford Nanopore processing scripts
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- dep: python3-pandas
- data structures for "relational" or "labeled" data