Package: discosnp (4.4.4-1)

[ Source: discosnp  ]

discovering Single Nucleotide Polymorphism from raw set(s) of reads

Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).

Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.

The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:

 1) its mean read coverage
 2) the (phred) quality of reads generating the polymorphism.

This program is superseded by DiscoSnp++.

Other Packages Related to discosnp

• dep: gatb-core

  Genome Analysis Toolbox with de-Bruijn graph

• dep: libc6 (>= 2.29)

  GNU C 라이브러리: 공유 라이브러리
  also a virtual package provided by libc6-udeb

• dep: libgatbcore3 (>= 1.4.2+dfsg)

  dynamic library of the Genome Analysis Toolbox

• dep: libgcc-s1 (>= 3.0)

  GCC 기능 지원 라이브러리

• dep: libhdf5-103-1

  HDF5 C runtime files - serial version

• dep: libstdc++6 (>= 9)

  GNU 표준 C++ 라이브러리 v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.2.6)

  압축 라이브러리 - 런타임

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