Paket: discosnp (4.4.4-1)

[ Quellcode: discosnp  ]

discovering Single Nucleotide Polymorphism from raw set(s) of reads

Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).

Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.

The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:

 1) its mean read coverage
 2) the (phred) quality of reads generating the polymorphism.

This program is superseded by DiscoSnp++.

Andere Pakete mit Bezug zu discosnp

• dep: gatb-core

  Genome Analysis Toolbox with de-Bruijn graph

• dep: libc6 (>= 2.29)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libgatbcore3 (>= 1.4.2+dfsg)

  dynamic library of the Genome Analysis Toolbox

• dep: libgcc-s1 (>= 3.0)

  GCC Support-Bibliothek

• dep: libhdf5-103-1

  Hierarchisches Datenformat 5 (HDF5) - C-Laufzeitdateien - serielle Version

• dep: libstdc++6 (>= 9)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• dep: python3

  Interaktive objektorientierte Hochsprache (Python3-Standardversion)

• dep: zlib1g (>= 1:1.2.6)

  Kompressions-Bibliothek - Laufzeit

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