パッケージ: libfreecontact-perl (0.08-9 など)
libfreecontact-perl に関するリンク
Debian の資源:
libfreecontact-perl ソースパッケージをダウンロード:
- [libfreecontact-perl_0.08-9.dsc]
- [libfreecontact-perl_0.08.orig.tar.gz]
- [libfreecontact-perl_0.08-9.debian.tar.xz]
メンテナ:
外部の資源:
- ホームページ [rostlab.org]
類似のパッケージ:
fast protein contact predictor - binding for Perl
FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).
FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.
A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.
This package contains the Perl binding.
その他の libfreecontact-perl 関連パッケージ
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- dep: libc6 (>= 2.34)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libfreecontact0t64 (>= 1.0.21)
- fast protein contact predictor library
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- dep: libgcc-s1 (>= 3.5)
- GCC 共有ライブラリ
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- dep: perl (>= 5.40.0-6)
- Larry Wall 作の実用的な抽出とレポート用の言語
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- dep: perlapi-5.40.0
- 以下のパッケージによって提供される仮想パッケージです: perl-base