Paquet : libfreecontact-perl (0.08-9 et autres)
Liens pour libfreecontact-perl
Ressources Debian :
- Rapports de bogues
- Developer Information
- Journal des modifications Debian
- Fichier de licence
- Suivis des correctifs pour Debian
Télécharger le paquet source libfreecontact-perl :
- [libfreecontact-perl_0.08-9.dsc]
- [libfreecontact-perl_0.08.orig.tar.gz]
- [libfreecontact-perl_0.08-9.debian.tar.xz]
Responsables :
- Debian Med Packaging Team (Page QA, Archive du courrier électronique)
- Laszlo Kajan (Page QA)
- Andreas Tille (Page QA)
Ressources externes :
- Page d'accueil [rostlab.org]
Paquets similaires :
fast protein contact predictor - binding for Perl
FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).
FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.
A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.
This package contains the Perl binding.
Autres paquets associés à libfreecontact-perl
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- dep: libc6 (>= 2.34)
- bibliothèque C GNU : bibliothèques partagées
un paquet virtuel est également fourni par libc6-udeb
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- dep: libfreecontact0t64 (>= 1.0.21)
- fast protein contact predictor library
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- dep: libgcc-s1 (>= 3.5)
- bibliothèque de prise en charge de GCC
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- dep: perl (>= 5.40.0-6)
- langage de rapports et d'extractions pratiques de Larry Wall
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- dep: perlapi-5.40.0
- paquet virtuel fourni par perl-base
Télécharger libfreecontact-perl
Architecture | Version | Taille du paquet | Espace occupé une fois installé | Fichiers |
---|---|---|---|---|
armel | 0.08-9+b5 | 61,0 ko | 204,0 ko | [liste des fichiers] |