パッケージ: ariba (2.14.6+ds-2 など) [debports]
Antibiotic Resistance Identification By Assembly
ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.
その他の ariba 関連パッケージ
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- dep: bowtie2 (>= 2.1.0)
- ultrafast memory-efficient short read aligner
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- dep: cd-hit
- suite of programs designed to quickly group sequences
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- dep: fastaq (>= 3.12.0)
- FASTA and FASTQ file manipulation tools
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- dep: libc6 (>= 2.4)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libfml0 (>= 0.1-4~)
- library for assembling Illumina short reads in small regions
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- dep: libgcc-s2 (>= 4.2.1)
- GCC 共有ライブラリ
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- dep: libminimap0 (>= 0.2)
- library for approximate mapping of long biosequences
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- dep: libstdc++6 (>= 5.2)
- GNU 標準 C++ ライブラリ v3
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- dep: mash
- fast genome and metagenome distance estimation using MinHash
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- dep: mummer
- 遺伝子全体の効率的な配列アライメント
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.11)
- dep: python3 (>= 3.9~)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-bs4
- error-tolerant HTML parser for Python 3
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- dep: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
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- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab
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- dep: python3-pymummer (>= 0.10.2)
- Python 3 interface to MUMmer
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- dep: python3-pysam (>= 0.9.1)
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-tk
- Tkinter - Writing Tk applications with Python 3.x
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- dep: zlib1g (>= 1:1.1.4)
- 圧縮ライブラリ - ランタイム
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- sug: spades
- genome assembler for single-cell and isolates data sets