[ ソース: murasaki ]
パッケージ: murasaki-mpi (1.68.6-8 など)
murasaki-mpi に関するリンク
Debian の資源:
murasaki ソースパッケージをダウンロード:
メンテナ:
外部の資源:
- ホームページ [murasaki.dna.bio.keio.ac.jp]
類似のパッケージ:
homology detection tool across multiple large genomes (MPI-version)
Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.
Murasaki is an anchor alignment software, which is
* exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 52 wall minutes)) * scalable (Arbitrarily parallelizable across multiple nodes using MPI. Even a single node with 16GB of ram can handle over 1Gbp of sequence.) * unlimited pattern length * repeat tolerant * intelligent noise reduction
This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.
その他の murasaki-mpi 関連パッケージ
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- dep: libboost-filesystem1.67.0
- C++ でのファイルシステム操作 (ポータブルなパス、ディレクトリの列挙など)
-
- dep: libboost-iostreams1.67.0
- Boost.Iostreams ライブラリ
-
- dep: libboost-regex1.67.0 (>= 1.67.0-10)
- regular expression library for C++
-
- dep: libboost-system1.67.0
- Operating system (e.g. diagnostics support) library
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
- dep: libc6 (>= 2.17) [arm64]
- dep: libc6 (>= 2.3.6-6~) [i386]
- dep: libc6 (>= 2.4) [armhf]
-
- dep: libcrypto++6
- General purpose cryptographic library - shared library
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- dep: libgcc1 (>= 1:3.0) [amd64, arm64]
- GCC 共有ライブラリ
- dep: libgcc1 (>= 1:3.5) [armhf]
- dep: libgcc1 (>= 1:4.2) [i386]
-
- dep: libopenmpi3
- high performance message passing library -- shared library
-
- dep: libstdc++6 (>= 5.2)
- GNU 標準 C++ ライブラリ v3
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- dep: murasaki-common
- homology detection tool across multiple large genomes (common files)