[ ソース: sga ]
パッケージ: sga (0.10.15-4)
de novo genome assembler that uses string graphs
The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.
SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.
その他の sga 関連パッケージ
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- dep: libbamtools2.5.1
- dynamic library for manipulating BAM (genome alignment) files
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- dep: libc6 (>= 2.23)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libgcc1 (>= 1:3.0)
- GCC 共有ライブラリ
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) サポートライブラリ
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- dep: libstdc++6 (>= 5.2)
- GNU 標準 C++ ライブラリ v3
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- dep: python
- 対話式の高レベルオブジェクト指向言語 (Python2 バージョン)
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- dep: python-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 2)
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- dep: python-ruffus
- Python computation pipeline library widely used in bioinformatics
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.1.4)
- 圧縮ライブラリ - ランタイム
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- rec: abyss (>= 2.0.2-1)
- de novo, parallel, sequence assembler for short reads