パッケージ: r-bioc-fishpond (2.4.1+ds-1)

[ ソース: r-bioc-fishpond  ]

Differential transcript and gene expression with inferential replicates

Fishpond contains methods for differential transcript and gene expression analysis of RNA-seq data using inferential replicates for uncertainty of abundance quantification, as generated by Gibbs sampling or bootstrap sampling. Also the package contains utilities for working with Salmon and Alevin quantification files.

その他の r-bioc-fishpond 関連パッケージ

• dep: r-api-4.0

  以下のパッケージによって提供される仮想パッケージです: r-base-core

• dep: r-api-bioc-3.16

  以下のパッケージによって提供される仮想パッケージです: r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-2)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-genomicranges

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• dep: r-bioc-iranges

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• dep: r-bioc-qvalue

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• dep: r-bioc-s4vectors

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• dep: r-bioc-singlecellexperiment

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• dep: r-bioc-summarizedexperiment

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• dep: r-cran-abind

  GNU R abind 多次元行列結合関数

• dep: r-cran-gtools

  Greg Warnes などによる R プログラミングツール付き GNU R パッケージ

• dep: r-cran-jsonlite

  Robust, High Performance JSON Parser and Generator for R

• dep: r-cran-matrix

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• dep: r-cran-matrixstats

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• dep: r-cran-svmisc

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• sug: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• sug: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-ensembldb

  GNU R utilities to create and use an Ensembl based annotation database

• sug: r-bioc-genomeinfodb

  BioConductor utilities for manipulating chromosome identifiers

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-gviz

  Plotting data and annotation information along genomic coordinates

• sug: r-bioc-limma

  linear models for microarray data

• sug: r-bioc-org.hs.eg.db

  genome-wide annotation for Human

• sug: r-bioc-tximeta

  Transcript Quantification Import with Automatic Metadata

• sug: r-bioc-tximportdata

  GNU R various transcript abundance quantifiers

• sug: r-cran-data.table

  GNU R extension of Data.frame

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-pheatmap

  GNU R package to create pretty heatmaps

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-samr

  GNU R significance analysis of microarrays

• sug: r-cran-testthat

  GNU R testsuite

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