[ ソース: ragout ]
パッケージ: ragout (2.3-4)
Reference-Assisted Genome Ordering UTility
Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Given initial assembly fragments (contigs/scaffolds) and one or multiple related references (complete or draft), it produces a chromosome-scale assembly (as a set of scaffolds).
The approach is based on the analysis of genome rearrangements (like inversions or chromosomal translocations) between the input genomes and reconstructing the most parsimonious structure of the target genome.
Ragout now supports both small and large genomes (of mammalian scale and complexity). The assembly of highly polymorphic genomes is currently limited.
その他の ragout 関連パッケージ
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- dep: libc6 (>= 2.34)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libgcc-s1 (>= 4.2)
- GCC 共有ライブラリ
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- dep: libstdc++6 (>= 11)
- GNU 標準 C++ ライブラリ v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-networkx
- tool to create, manipulate and study complex networks (Python3)
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- rec: sibelia
- comparative genomics tool