Package: ngmlr (0.2.7+git20210816.a2a31fb+dfsg-2 and others)

[ Source: ngmlr  ]

CoNvex Gap-cost alignMents for Long Reads

Ngmlr is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and then a banded Smith- Waterman alignment algorithm to compute the final alignment. Ngmlr uses a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments.

Other Packages Related to ngmlr

• dep: libc6 (>= 2.29) [m68k, ppc64, sparc64, x32]

  Libreria C GNU: librerie condivise
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.32) [sh4]

  dep: libc6 (>= 2.34) [amd64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x]

  dep: libc6 (>= 2.38) [arm64]

• dep: libc6.1 (>= 2.29) [alpha]

  Libreria C GNU: librerie condivise
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.32) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]

  libreria di supporto a GCC

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64, sh4]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  libreria di supporto a GCC

• dep: libssw0 (>= 1.1)

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 11) [not arm64, riscv64]

  libreria GNU Standard C++, versione 3

  dep: libstdc++6 (>= 13.1) [arm64, riscv64]

• dep: libunwind8 [ia64]

  libreria per tracciare la catena di chiamate di un programma - runtime

• dep: zlib1g (>= 1:1.1.4)

  libreria di compressione - runtime

Download ngmlr

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-2	671.9 kB	1,238.0 kB	[list of files]
amd64	0.2.7+git20210816.a2a31fb+dfsg-2+b1	673.7 kB	1,157.0 kB	[list of files]
arm64	0.2.7+git20210816.a2a31fb+dfsg-2+b2	655.1 kB	1,173.0 kB	[list of files]
armel	0.2.7+git20210816.a2a31fb+dfsg-2+b1	648.7 kB	1,172.0 kB	[list of files]
armhf	0.2.7+git20210816.a2a31fb+dfsg-2+b1	649.2 kB	1,044.0 kB	[list of files]
i386	0.2.7+git20210816.a2a31fb+dfsg-2+b1	680.7 kB	1,184.0 kB	[list of files]
ia64 (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-2	715.8 kB	1,608.0 kB	[list of files]
m68k (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-2	661.5 kB	1,171.0 kB	[list of files]
mips64el	0.2.7+git20210816.a2a31fb+dfsg-2+b1	657.3 kB	1,260.0 kB	[list of files]
ppc64 (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-2	673.7 kB	1,300.0 kB	[list of files]
ppc64el	0.2.7+git20210816.a2a31fb+dfsg-2+b1	677.5 kB	1,301.0 kB	[list of files]
riscv64	0.2.7+git20210816.a2a31fb+dfsg-2+b1	669.3 kB	1,077.0 kB	[list of files]
s390x	0.2.7+git20210816.a2a31fb+dfsg-2+b1	655.1 kB	1,173.0 kB	[list of files]
sh4 (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-2	693.8 kB	1,132.0 kB	[list of files]
sparc64 (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-2	648.4 kB	1,168.0 kB	[list of files]
x32 (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-2	669.3 kB	1,127.0 kB	[list of files]