Package: pizzly (0.37.3+ds-9)

[ Source: pizzly  ]

Identifies gene fusions in RNA sequencing data

For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.

Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.

Other Packages Related to pizzly

• dep: kallisto

  near-optimal RNA-Seq quantification

• dep: libc6 (>= 2.34)

  Libreria C GNU: librerie condivise
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  libreria di supporto a GCC

• dep: libstdc++6 (>= 12)

  libreria GNU Standard C++, versione 3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4)

  libreria di compressione - runtime

• rec: python3-h5py

  interfaccia Python di uso generico per hdf5

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