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[ Source: libgkarrays  ]

Package: libgkarrays1t64 (2.1.0+dfsg-4.2 and others)

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library to query large collection of NGS sequences

Gk-arrays are provided as a simple-to-use C++ library dedicated to queries on large collection of sequences as produced by high-throughput sequencers (e.g. HiSeq 2000 from Illumina, 454 from Roche).

Gk-arrays index k-mers of reads and allows one to answer different queries on that read collection (e.g. how many reads share this k-mer? where does this k-mer occur in the read collection?).

Gk-arrays consist of a space-efficient alternative to hash tables while being similar in terms of query times.

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Download for all available architectures
Architecture Version Package Size Installed Size Files
amd64 2.1.0+dfsg-4.2 56.2 kB174.0 kB [list of files]
arm64 2.1.0+dfsg-4.2+b1 53.1 kB247.0 kB [list of files]
armel 2.1.0+dfsg-4.2 52.5 kB149.0 kB [list of files]
armhf 2.1.0+dfsg-4.2 51.6 kB133.0 kB [list of files]
i386 2.1.0+dfsg-4.2 62.7 kB185.0 kB [list of files]
mips64el 2.1.0+dfsg-4.2 55.0 kB255.0 kB [list of files]
ppc64el 2.1.0+dfsg-4.2 58.1 kB246.0 kB [list of files]
riscv64 2.1.0+dfsg-4.2 57.7 kB149.0 kB [list of files]
s390x 2.1.0+dfsg-4.2 52.5 kB173.0 kB [list of files]