Package: murasaki-common (1.68.6-13)

[ Source: murasaki  ]

homology detection tool across multiple large genomes (common files)

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

This package contains all files that are common to the single core murasaki package and the multi core murasaki-mpi package.

Other Packages Related to murasaki-common

• dep: gnuplot

  Command-line driven interactive plotting program.
  also a virtual package provided by gnuplot-nox, gnuplot-qt, gnuplot-x11

  or gnuplot5

  Package not available

• dep: imagemagick

  image manipulation programs -- binaries
  also a virtual package provided by graphicsmagick-imagemagick-compat, imagemagick-6.q16

• dep: libbio-perl-perl

  BioPerl core perl modules

• dep: r-cran-rocr

  GNU R package to prepare and display ROC curves

• rec: libterm-readkey-perl

  perl module for simple terminal control

• rec: libtext-wrapi18n-perl

  internationalized substitute of Text::Wrap

  or libtext-wrapper-perl

  simple word wrapping routine

Download murasaki-common

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Architecture	Package Size	Installed Size	Files
all	141.9 kB	433.0 kB	[list of files]