Package: libseqlib2 (1.2.0+dfsg-11 and others) [debports]

[ Source:  ]

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

Other Packages Related to libseqlib2

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.38)

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

• dep: libfml0 (>= 0.1+git20190320.b499514)

  library for assembling Illumina short reads in small regions

• dep: libgcc-s1 (>= 3.4)

  GCC támogató programkönyvtár

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libjsoncpp26 (>= 1.9.6)

  library for reading and writing JSON for C++

• dep: liblzma5 (>= 5.1.1alpha+20110809)

  XZ-format compression library

• dep: libssw0 (>= 1.1)

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.1.4)

  tömörítő könyvtár - futásidejű

Download libseqlib2

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
sparc64 (unofficial port)	1.2.0+dfsg-11+b2	129.4 kB	1,059.0 kB	[list of files]