Package: python3-freecontact (1.1-8 and others)

[ Source: python-freecontact  ]

fast protein contact predictor - binding for Python3

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the Python3 binding.

Other Packages Related to python3-freecontact

• dep: libboost-python1.83.0 (>= 1.83.0)

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• dep: libboost-python1.83.0-py311 [ia64]

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• dep: libboost-python1.83.0-py312

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• dep: libc6 (>= 2.32) [not alpha, ia64, sh4]

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• dep: libfreecontact0t64 (>= 1.0.21)

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• dep: libgcc-s1 (>= 3.0) [not armel, armhf, hppa, ia64, m68k]

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  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

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• dep: libgcc-s4 (>= 4.1.1) [hppa]

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• dep: python3 (<< 3.13) [alpha, ia64, x32]

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  dep: python3 (<< 3.14) [not alpha, ia64, x32]

  dep: python3 (>= 3.11~) [ia64]

  dep: python3 (>= 3.12~) [not ia64]

Download python3-freecontact

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.1-6+b8	70.5 kB	277.0 kB	[list of files]
amd64	1.1-8+b1	75.6 kB	392.0 kB	[list of files]
arm64	1.1-8+b1	73.0 kB	406.0 kB	[list of files]
armel	1.1-8+b1	72.3 kB	364.0 kB	[list of files]
armhf	1.1-8+b1	72.0 kB	324.0 kB	[list of files]
hppa (unofficial port)	1.1-8+b1	76.5 kB	404.0 kB	[list of files]
i386	1.1-8+b1	77.3 kB	388.0 kB	[list of files]
ia64 (unofficial port)	1.1-6+b7	95.0 kB	517.0 kB	[list of files]
m68k (unofficial port)	1.1-8+b1	73.4 kB	356.0 kB	[list of files]
mips64el	1.1-8+b1	72.2 kB	420.0 kB	[list of files]
ppc64 (unofficial port)	1.1-8+b1	75.5 kB	536.0 kB	[list of files]
ppc64el	1.1-8+b1	75.8 kB	534.0 kB	[list of files]
riscv64	1.1-8+b1	74.8 kB	350.0 kB	[list of files]
s390x	1.1-8+b1	74.4 kB	382.0 kB	[list of files]
sh4 (unofficial port)	1.1-8+b1	81.5 kB	406.0 kB	[list of files]
sparc64 (unofficial port)	1.1-8+b1	70.8 kB	2,204.0 kB	[list of files]
x32 (unofficial port)	1.1-8	75.3 kB	261.0 kB	[list of files]