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Package: sibsim4 (0.20-5) [debports]

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align expressed RNA sequences on a DNA template

The SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing for introns. SIBsim4 is a fairly extensive rewrite of the original code with the following goals:

 * speed improvement;
 * allow large, chromosome scale, DNA sequences to be used;
 * provide more detailed output about splice types;
 * provide more detailed output about polyA sites;
 * misc code cleanups and fixes.

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Download sibsim4

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 30.9 kB85.0 kB [list of files]